Basic Information
VIS ID
TVIS30013518
Fusion event
HIV-LOC105375180 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
19641682/19602059 (Hg38)
End
19641682/19602059 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375180
Nearest miRNA
hsa-mir-1302-6/Upstream/1474750; hsa-mir-10399/Downstream/103299;
Nearest TSS
ENST00000635602/Upstream/248525; ENST00000590912/Downstream/98276;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/456649, chr7-CpG: 44/Downstream/106715
Nearby gene
TWISTNB(No orient, 93403)
Upstream sequence
caggttttatattaggctgtatggttcaacctgcaagtcaatatataacatttatgggtaatagccagctgaagccaacatggctaggtatgtacttgat
Downstream sequence
tcttgtttaccaggtagaactatctgttgtctcaggccacaggctgatctgtggtttgcacagaagtctgagctccctgttcagcccaagggagtggggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate