Basic Information
VIS ID
TVIS30013524
Fusion event
HIV-CHN2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
29284526/29244910 (Hg38)
End
29284526/29244910 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHN2
Nearest miRNA
hsa-mir-1183/Upstream/2075347; hsa-mir-10399/Downstream/435824;
Nearest TSS
ENST00000635602/Upstream/35940; ENST00000483081/Downstream/43971;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/49480, chr7-CpG: 17/Downstream/318583
Upstream sequence
gaggcgtgaactctccctctatataaaccttctagacctcaaactctgtgatcccaGGCCCCATCACCTGTGGCTGTCCATTGTTCATGAGATAAGTACT
Downstream sequence
GAATCTTCATCTTGGTCTTTAGTTCTCTCCCAGTGTGACCTTACACTACTTTTTGGGCCGTGTCTTCAATTTCTTATTCATACTGGCCAGGCCAGATTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate