Basic Information
VIS ID
TVIS30013525
Fusion event
HIV-BBS9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
33395965/33356353 (Hg38)
End
33395965/33356353 (Hg38)
Orient
-
Location type
Intronic
Target gene
BBS9
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-3124-3p ; hsa-mir-676-5p ; hsa-mir-3121-5p ; hsa-mir-1264 ; hsa-mir-6875-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4778-3p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-1248 ; hsa-mir-5088-3p ; hsa-mir-28-3p ; hsa-mir-8084 ; hsa-mir-5582-3p
Nearest miRNA
hsa-mir-1183/Upstream/623276; hsa-mir-10399/Downstream/1584407;
Nearest TSS
ENST00000635602/Upstream/4426; ENST00000496029/Downstream/27401;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/226722, chr7-CpG: 153/Downstream/547700
Upstream sequence
TATATGGAAATTTCCTTGAAGTTGGAGAAAGTAGTGCTTTGTAATTGTTTTGTGGTGATATTGACAGTCGTGCTTTGTGCAGTATCTTAGATCATGTTAC
Downstream sequence
CATAATATTTTGAGTCAAAACATCTCATCATTGTAAAGTACAAATACACATGCCTCTAAAAACCTCACAGAATGTCATGAAATAATACCCTGGGACTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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