Basic Information
VIS ID
TVIS30013530
Fusion event
HIV-TRG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
38379626/38340025 (Hg38)
End
38379626/38340025 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRG
Nearest miRNA
hsa-mir-1183/Upstream/1420593; hsa-mir-10399/Downstream/4810870;
Nearest TSS
ENST00000635602/Upstream/4511; ENST00000629576/Downstream/973;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/28295, chr7-CpG: 95/Downstream/290814
Nearby gene
TRG-AS1(No orient, 1552)
Upstream sequence
AAAATGAAAACTGAACAAATAAACTAGCTATATCAATGTTGGCATGAACATGTAAAGAAAAATTATTTCAAATGATTTTGTTGAAAAAATATTCGGATTA
Downstream sequence
TGTACCCAAAaaggaaagaaagagagagaaaagcaaggaaggaagaaatgaaaaaaggaaggaaggaagggagggagagagggagggagggagggaggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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