Basic Information
VIS ID
TVIS30013531
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
39015079/38975479 (Hg38)
End
39015079/38975479 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/2056047; hsa-mir-10399/Downstream/4175416;
Nearest TSS
ENST00000635602/Upstream/43085; ENST00000464276/Downstream/2519;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/343918, chr7-CpG: 36/Downstream/464
Nearby gene
POU6F2(No orient, 2530)
Nearest cancer related gene
POU6F2(TSG, No orient, 2530)
Upstream sequence
ttttgcgctaacaccaatacagtacttggcacctagtacaggttccataaatatgtgcggaagagtgGGTGCTTCATGTGTGATAGTCACTATTGTGAAT
Downstream sequence
GTTACTTGACTCTGTGGTTTCATATgaaggggctccagttttggattcagagcaggttcaaatcatattcctattaatcatgagttgttacctttttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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