Basic Information
VIS ID
TVIS30013533
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
42361002/42321403 (Hg38)
End
42361002/42321403 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/5401971; hsa-mir-10399/Downstream/829492;
Nearest TSS
ENST00000635602/Upstream/83533; ENST00000432845/Downstream/385044;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/83548, chr7-CpG: 19/Downstream/172074
Nearby gene
GLI3(No orient, 84384)
Nearest cancer related gene
GLI3(OG, No orient, 84384)
Upstream sequence
caactacctttctactctctgcttccatgagtttgattattttaaattccacatataagtgagatcatgcattgcttagcataatatcctctagatctat
Downstream sequence
tcatgttttcacatatgtcaggatttgcttcttttttgaggtggaataatattgcatggcatatataagtcacattttctttagccattcatccagtgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate