Basic Information
VIS ID
TVIS30013534
Fusion event
HIV-STK17A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
43664816/43625217 (Hg38)
End
43664816/43625217 (Hg38)
Orient
+
Location type
UTR3
Fragile sites / regions
FRA7D
Target gene
STK17A
miRNAs that regulate target gene
hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-1305 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-4670-3p ; hsa-mir-4635 ; hsa-mir-3668 ; hsa-mir-5680 ; hsa-mir-148a-5p ; hsa-mir-1250-3p ; hsa-mir-6828-3p ; hsa-mir-6873-3p ; hsa-mir-6502-5p ; hsa-mir-1301-5p ; hsa-mir-767-3p ; hsa-mir-6728-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6824-5p ; hsa-mir-8060 ; hsa-mir-4639-3p ; hsa-mir-6783-5p
Nearest miRNA
hsa-mir-1183/Upstream/474223; hsa-mir-10399/Downstream/426549;
Nearest TSS
ENST00000635602/Upstream/2928; ENST00000453612/Downstream/16947;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/41424, chr7-CpG: 64/Downstream/103998
Upstream sequence
GAATTTGTGTACAAAGATATTTGTATTCACTTTCTTTAAAAAATCCAAGTAAAAGTGCCAAAACTACACTTCTGTAAATCTCTTGCATTATTCATATGTG
Downstream sequence
TATCTATATCTGCATAATGTTTGTTAATGTCTACTAAAATTGCTACTTTTTCACTTTGGATTTGTTTTTGGCAAAATTTTAGTCTAAACAGACATCTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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