VISDB Viral Integration Site DataBase

VIS ID

TVIS30013537

Fusion event

HIV-PPIA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p13

Reference genome

Start

End

44842344/44802745 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-1307-3p ; hsa-mir-320b ; hsa-mir-1226-3p ; hsa-mir-760 ; hsa-mir-455-3p ; hsa-mir-423-5p ; hsa-mir-342-5p ; hsa-mir-30c-1-3p ; hsa-mir-31-3p ; hsa-mir-18a-3p ; hsa-mir-324-5p ; hsa-mir-106b-5p ; hsa-mir-320a ; hsa-mir-218-5p ; hsa-mir-197-3p ; hsa-mir-26a-5p ; hsa-mir-18a-5p ; hsa-mir-17-3p ; hsa-mir-3200-3p ; hsa-mir-1200 ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-548v ; hsa-mir-610 ; hsa-mir-1252-5p ; hsa-mir-7978 ; hsa-mir-4456 ; hsa-mir-548q ; hsa-mir-4299 ; hsa-mir-6845-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-4662a-3p ; hsa-mir-4668-5p ; hsa-mir-3148 ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-6783-5p ; hsa-mir-1184 ; hsa-mir-1249-5p ; hsa-mir-186-3p ; hsa-mir-1914-3p ; hsa-mir-363-5p ; hsa-mir-3907 ; hsa-mir-4418 ; hsa-mir-4471 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-4802-3p ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-5194 ; hsa-mir-570-3p ; hsa-mir-6068 ; hsa-mir-608 ; hsa-mir-651-3p ; hsa-mir-6515-5p ; hsa-mir-6737-5p ; hsa-mir-6738-5p ; hsa-mir-6745 ; hsa-mir-6747-5p ; hsa-mir-6750-5p ; hsa-mir-6782-5p ; hsa-mir-6797-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6822-5p ; hsa-mir-6830-5p ; hsa-mir-6880-5p ; hsa-mir-6890-5p ; hsa-mir-7847-3p ; hsa-mir-8059

Nearest miRNA

hsa-mir-1183/Upstream/691833; hsa-mir-10399/Downstream/79003;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/5546, chr7-CpG: 72/Downstream/44923

Upstream sequence

TACTGCTTGTAGCATATAGAGCCTCTCCCTAGCTTTGGTTATGGAGGCTTTGAGGTTTTGCAAACCTGACCAATTTAAGCCATAAGATCTGGTCAAAGGG

Downstream sequence

ATACCCTTCCCACTAAGGACTTGGTTTCTCAGGAAATTATATGTACAGTGCTTGCTGGCAGTTAGATGTCAGGACAATCTAAGCTGAGAAAACCCCTTCT