Basic Information
VIS ID
TVIS30013539
Fusion event
HIV-CCM2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
45079625/45040026 (Hg38)
End
45079625/45040026 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7D
Target gene
CCM2
Nearest miRNA
hsa-mir-1183/Upstream/158226; hsa-mir-10399/Downstream/11915759;
Nearest TSS
ENST00000635602/Upstream/1765; ENST00000480382/Downstream/24577;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/39368, chr7-CpG: 66/Downstream/48354
Upstream sequence
tgaggcaggagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcacaccactgcactccagcttgggtgaaagagtgagactgtatgtc
Downstream sequence
aaaagaaaacaaaacaaaacaactatgttatttatatatctttaaaaaattcaatagaggtgttgaaagataaaagtaaaaaaaaaggccaggtgctgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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