Basic Information
VIS ID
TVIS30013541
Fusion event
HIV-ABCA13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
48545585/48505989 (Hg38)
End
48545585/48505989 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCA13
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3624189; hsa-mir-10399/Downstream/8449796;
Nearest TSS
ENST00000635602/Upstream/50926; ENST00000435451/Downstream/1883;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/50833, chr7-CpG: 30/Downstream/341924
Upstream sequence
ATTGGTTCAGTGAAACAGTCGTTATCTATCTATCTAGATGTGGCTTGATCTAGAGGTGAATATTGATCTGATTCATATCAGATAGTCTTCTTTGCATATT
Downstream sequence
gttacttagcctgagtatgtttcctctctgcaaacataggctatgggatacttatgaggattacacaataaaacatgagaacctatgaacatagggcctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate