VISDB Viral Integration Site DataBase

VIS ID

TVIS30013542

Fusion event

HIV-ZNF713 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

p11.2

Reference genome

Start

End

55981143/55913450 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4668-5p ; hsa-mir-3144-3p ; hsa-mir-561-3p ; hsa-mir-125b-2-3p ; hsa-mir-1267 ; hsa-mir-1273h-5p ; hsa-mir-1288-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-3664-5p ; hsa-mir-367-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-383-3p ; hsa-mir-3913-5p ; hsa-mir-3974 ; hsa-mir-4423-5p ; hsa-mir-4430 ; hsa-mir-4433a-3p ; hsa-mir-4457 ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4728-5p ; hsa-mir-4768-3p ; hsa-mir-513b-5p ; hsa-mir-5693 ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-624-3p ; hsa-mir-6501-5p ; hsa-mir-6513-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7112-5p ; hsa-mir-744-3p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-1183/Upstream/11031650; hsa-mir-10399/Downstream/1042335;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/25756, chr7-CpG: 52/Downstream/38228

Upstream sequence

accaccacgcccggccaattttttgtatttttagtagagatgagctttcactgagttagccaggatggtctcgatcttctgtcctcgtgatgcacccacc

Downstream sequence

tcagcctcccaaagtgctgggattacaggtgtgagccaccacgcccggcctaagtctgttacgattctataatctgattcggtattatgtaaactggtga