Basic Information
VIS ID
TVIS30013543
Fusion event
HIV-GABPAP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
63357814/63897436 (Hg38)
End
63357814/63897436 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
GABPAP
Nearest miRNA
hsa-mir-1183/Upstream/276267; hsa-mir-10399/Downstream/781628;
Nearest TSS
ENST00000635602/Upstream/3958; ENST00000450544/Downstream/1405;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/106866, chr7-CpG: 30/Downstream/3312
Nearby gene
LINC01005(No orient, 126982)
Upstream sequence
GGTTGATCTTCAGGTAAATTGACTGATCACATTTATTTTTGTATCAGTCTATGTCATTTAATTAGGAAAAACTGTTTAGTTGTTTTCTCCCCTGATTAAT
Downstream sequence
GGTGATACTCAAGTATGATACAAAAAGAACTGTACCACCAAATATTTTTGTGAGGTCTGCTGTTTTCCATATTCATTTTATGCTACTGCCTTTAAGAAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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