VISDB Viral Integration Site DataBase

VIS ID

TVIS30013544

Fusion event

HIV-POM121C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q11.23

Reference genome

Start

End

75101910/75472644 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-3942-3p ; hsa-mir-29b-2-5p ; hsa-mir-3620-5p ; hsa-mir-1587 ; hsa-mir-3678-3p ; hsa-mir-4675 ; hsa-mir-4741 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-184 ; hsa-mir-4533 ; hsa-mir-2467-3p ; hsa-mir-3158-5p ; hsa-mir-6125 ; hsa-mir-2392 ; hsa-mir-651-3p ; hsa-mir-340-5p ; hsa-mir-3163 ; hsa-mir-499b-3p ; hsa-mir-6507-5p ; hsa-mir-499a-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-2110 ; hsa-mir-2355-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-4261 ; hsa-mir-7515 ; hsa-mir-451b ; hsa-mir-3154 ; hsa-mir-5680 ; hsa-mir-4797-5p ; hsa-mir-4475 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-5007-3p ; hsa-mir-1255b-2-3p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-3925-5p ; hsa-mir-589-5p ; hsa-mir-6077 ; hsa-mir-6847-5p ; hsa-mir-6859-5p

Nearest miRNA

hsa-mir-10525/Upstream/876618; hsa-mir-10399/Downstream/442553;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/29656, chr7-CpG: 75/Downstream/12910

Upstream sequence

gcctgtaatcctagcactttgagaggctgaggcaggtggatcacaaggtcaggagttagagaccagcctgaccaatatggtgaaaccccgtctctactaa

Downstream sequence

aaatataaaaattagccaggcatggtggtgtgcacctgtaatcccagctactttgggaggctgaggcaggagaatcgcttgaacctgggagacagaggct