Basic Information
VIS ID
TVIS30013547
Fusion event
HIV-LOC100133091 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
76209381/76580064 (Hg38)
End
76209381/76580064 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA7J
Target gene
LOC100133091
Nearest miRNA
hsa-mir-10525/Upstream/664795; hsa-mir-10399/Downstream/15623951;
Nearest TSS
ENST00000635602/Upstream/38605; ENST00000415750/Downstream/38236;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/29894, chr7-CpG: 88/Downstream/46777
Upstream sequence
ATACAGGCATATACAGCTTTTTGTGTAATGCTCACAAATCAAATTCAAAGTAATGATACTGGCTTAATAAACTACAGGTTCATTGAAATGAATGGCAGGA
Downstream sequence
AAGGTAGCATTTCTTGATTCAGGATGTAAGGGCAACTTTAAAACTCTATAGCTACTTCATGAAACCATACATTGCTAAGAAGATGTTCTCATAAAGAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate