Basic Information
VIS ID
TVIS30013557
Fusion event
HIV-LOC105375402 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
93556892/93927580 (Hg38)
End
93556892/93927580 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375402
Nearest miRNA
hsa-mir-10525/Upstream/210575; hsa-mir-10399/Downstream/2292082;
Nearest TSS
ENST00000635602/Upstream/5881; ENST00000426193/Downstream/40810;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/36708, chr7-CpG: 41/Downstream/76547
Nearby gene
GNG11(No orient, 1066)
Upstream sequence
TGGTTAGCTCTAGCTCAAATGGACTTAGTCATTAACTTGACCTGCAATTTTCAATGTGGCACCAGAAGCCAATGTTTCTCCTTGACTAGCTCTTTTCTCC
Downstream sequence
CACTTACACATGTAGGTATACCTTACTATCAAGCGAGAGAGGCGCCTGTAACCTGTAGCAGCTTTCTAAAGTATATCAGCATCCTCGTTCTGAAATTCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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