Basic Information
VIS ID
TVIS30013558
Fusion event
HIV-LOC107986823 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
95101135/95471823 (Hg38)
End
95101135/95471823 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986823
Nearest miRNA
hsa-mir-10525/Upstream/1754818; hsa-mir-10399/Downstream/747839;
Nearest TSS
ENST00000635602/Upstream/36494; ENST00000416593/Downstream/12;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/36726, chr7-CpG: 15/Downstream/56031
Nearby gene
ASB4(No orient, 14078)
Upstream sequence
GCAACAGTGGAGTTGACTGCAGCTGGGGCAAAGGTAGCAGGTTaataccagctaacacctccagagcatttgccatgtgccagggacaatgctaagtatt
Downstream sequence
ttatgtgtgctaacactatgctttcttaggcaggtactattattatctgctttttttaacagatgaagaaaccgagccacacagaggttaaataacttgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate