Basic Information
VIS ID
TVIS30013559
Fusion event
HIV-ZNF655 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99167406/99569783 (Hg38)
End
99167406/99569783 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
ZNF655
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-423-5p ; hsa-mir-129-5p ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-584-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-6778-3p
Nearest miRNA
hsa-mir-10525/Upstream/160519; hsa-mir-10399/Downstream/523777;
Nearest TSS
ENST00000635602/Upstream/10921; ENST00000494357/Downstream/416;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/10437, chr7-CpG: 29/Downstream/10408
Upstream sequence
tttgcacctaccaagtacttagtaaaACTTAATAATATTTTGATGGTACTGATGATACCCTGTTCTCTCTTCTAAACTGTGATATTGTATCTTTACCTGC
Downstream sequence
TAGGCATTTTCTCTTTTAAAAAAAAttatttcagtagttttgggggcgtacaagtggttttttgttacatggatgaattctaatacatagtggtgaattc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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