Basic Information
VIS ID
TVIS30013562
Fusion event
HIV-PMS2P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99929328/100331705 (Hg38)
End
99929328/100331705 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA7F
Target gene
PMS2P1
Nearest miRNA
hsa-mir-10525/Upstream/175036; hsa-mir-10399/Downstream/24946;
Nearest TSS
ENST00000635602/Upstream/17264; ENST00000493091/Downstream/20471;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/59243, chr7-CpG: 84/Downstream/3910
Upstream sequence
tttttagtagagacagggttttaccacgttggttaggctggtcttgaactcctgacctcaaagcatcagcccccctcagcctcccaaagtgctgggatta
Downstream sequence
cagatgtgagccactactccaggAtttattttattttattttattttattttattgttttgagacggagtcttgctctgtccccaggctgccgtgcagtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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