Basic Information
VIS ID
TVIS30013563
Fusion event
HIV-LOC107986829 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100113888/100516265 (Hg38)
End
100113888/100516265 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
LOC107986829
Nearest miRNA
hsa-mir-10525/Upstream/159544; hsa-mir-10399/Downstream/351771;
Nearest TSS
ENST00000635602/Upstream/6548; ENST00000477022/Downstream/22946;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/22290, chr7-CpG: 63/Downstream/22560
Nearby gene
NYAP1(No orient, 21464)
Upstream sequence
caccgtgctggccagacctccctctctttcagcaactaaagagttaatccccagcatagctgttgatctccaggaacaggacttagtgctaaaatcagtg
Downstream sequence
tctgttctaaatggctgccggccatgtggtaaccagctgtgaaatattttgaatatcacccctgGCTGTGGCCACAAAAAGGCAAAAGCCAAGTAGGTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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