Basic Information
VIS ID
TVIS30013579
Fusion event
HIV-POT1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
GRCh37/hg19
Start
124703986/125063932 (Hg38)
End
124703986/125063932 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
POT1-AS1
Nearest miRNA
hsa-mir-10525/Upstream/8043613; hsa-mir-10399/Downstream/1994156;
Nearest TSS
ENST00000635602/Upstream/70924; ENST00000424515/Downstream/89679;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/133787, chr7-CpG: 237/Downstream/2187314
Upstream sequence
acagatagacaggtagagatagagatgtaggagaggggatttattaggggaatttacttaggtgattatggaggctgagaagtcccataataaataaact
Downstream sequence
ggagatctagggaagatggtggcttgggcaagtccaagttcagaagcctcaaaatcaggaaagcaaaaggtgtagctctcaggctgaagctgaaggcctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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