Basic Information
VIS ID
TVIS30013581
Fusion event
HIV-CEP41 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
130053058/130413217 (Hg38)
End
130053058/130413217 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7H
Target gene
CEP41
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-129-5p ; hsa-mir-153-5p
Nearest miRNA
hsa-mir-10525/Upstream/638203; hsa-mir-10399/Downstream/82894;
Nearest TSS
ENST00000635602/Upstream/10531; ENST00000399874/Downstream/4115;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/31332, chr7-CpG: 49/Downstream/27469
Upstream sequence
agtagctgggattacagttgcccaccaccaggcctggctaatttgtgtattttagtagagacggggtttcaccatgttggccaggctggtttcgagctcc
Downstream sequence
tggcctcaagtgatccacccacctcaacctcccaaagtgctgggattacaggcgtgagccaaagcgtccggccCCACCATTTAAAAAAATaaaataaaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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