VISDB Viral Integration Site DataBase

VIS ID

TVIS30013588

Fusion event

HIV-NUP205 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr7

Cytoband

q33

Reference genome

Start

End

135243147/135558399 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-766-3p ; hsa-mir-769-3p ; hsa-mir-125b-5p ; hsa-mir-221-3p ; hsa-mir-10a-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-26a-5p ; hsa-mir-5009-5p ; hsa-mir-651-5p ; hsa-mir-4775 ; hsa-mir-3148 ; hsa-mir-4496 ; hsa-mir-590-3p ; hsa-mir-100-3p ; hsa-mir-5006-5p ; hsa-mir-6807-5p ; hsa-mir-1227-3p ; hsa-mir-874-5p ; hsa-mir-5699-5p ; hsa-mir-4252 ; hsa-mir-4755-3p ; hsa-mir-6889-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-323a-3p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-3941 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-3680-5p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-298 ; hsa-mir-3202 ; hsa-mir-3714 ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4533 ; hsa-mir-4649-3p ; hsa-mir-485-5p ; hsa-mir-490-3p ; hsa-mir-605-3p ; hsa-mir-6086 ; hsa-mir-619-3p ; hsa-mir-6511a-5p ; hsa-mir-665 ; hsa-mir-6884-5p ; hsa-mir-7160-5p ; hsa-mir-129-5p ; hsa-mir-215-3p ; hsa-mir-5007-5p ; hsa-mir-6773-3p ; hsa-mir-6812-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-10525/Upstream/351321; hsa-mir-10399/Downstream/1344768;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/47838, chr7-CpG: 48/Downstream/103909

Upstream sequence

GAATACGCATCAGGTCTTCCACAGTGAAGCCAGAGGACCCGAGATATTTTCCAGCCATGAGCAGAGGCTGAAAGTAGGCGTCGGAGTTCCTTATAGGGTG

Downstream sequence

GGAGATCTTGCAGGCAGCGAATACTCCCTATTATGAAGTCGGCCATCTGAAAGGTGGTCAGGAAGAGGGTGGCGGGGCTTCAGCAGACGTCTTCTAACCC