Basic Information
VIS ID
TVIS30013595
Fusion event
HIV-GIMAP8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150170704/150473616 (Hg38)
End
150170704/150473616 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
GIMAP8
miRNAs that regulate target gene
hsa-mir-1226-3p
Nearest miRNA
hsa-mir-10399/Upstream/3095495; hsa-mir-153-2/Downstream/764805;
Nearest TSS
ENST00000635602/Upstream/22986; ENST00000313543/Downstream/41214;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/65174, chr7-CpG: 44/Downstream/246710
Upstream sequence
ttgtgtcctgcttcttttacttagcgtgtttttttgagatccatctatactgcatatcgctagttcactttttttttaattgctgagtgtatttgatttt
Downstream sequence
atACCACCAAGGGGCATTTGAAAATCGGATTCTCCCTGCTCCTGCCTTAGCCCCTGGGCTTACCTTTGGTACGTACTTACCTTTGGTAGGCCCCAGTACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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