Basic Information
VIS ID
TVIS30013597
Fusion event
HIV-STRADBP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150209623/150512535 (Hg38)
End
150209623/150512535 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
STRADBP1
Nearest miRNA
hsa-mir-10399/Upstream/3134414; hsa-mir-153-2/Downstream/725886;
Nearest TSS
ENST00000635602/Upstream/61905; ENST00000313543/Downstream/2295;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/104093, chr7-CpG: 44/Downstream/207791
Nearby gene
GIMAP7(No orient, 2322)
Upstream sequence
TCTCCAGTGCACCAACTGTATTTTCAAGTATAATTCTGGTATTTGTACCTAGCAATACAGAAGAAAAAGCAGCAAGGAGAAAGTGTCAAGTATATAGGAC
Downstream sequence
ATAAGATGATTTGCCAGCCCTAGCTAGAATTCCCAATATGAATCTTTTTCATCAGGAAAACCACATTCTGGCTCAGTCCAAGGTAACACCGGAGGCAGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate