Basic Information
VIS ID
TVIS30013607
Fusion event
HIV-GIMAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150419927/150722839 (Hg38)
End
150419927/150722839 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA7I
Target gene
GIMAP1
miRNAs that regulate target gene
hsa-mir-574-5p ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-4494 ; hsa-mir-892a ; hsa-mir-548c-3p ; hsa-mir-4517
Nearest miRNA
hsa-mir-10399/Upstream/3344718; hsa-mir-153-2/Downstream/515582;
Nearest TSS
ENST00000635602/Upstream/586; ENST00000469272/Downstream/14509;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1909, chr7-CpG: 124/Downstream/76882
Upstream sequence
tactgcaatcacatttatacccactttcaactatatgcaaatttaggggtggattatgccaaaatttctagaaaaaaggtcgtaacttccaggtcgtggg
Downstream sequence
attgttgctatggaaaggagccaaaacttccagctgttgccttagcaatggtaacctgacgtggcactggtgagtgtgttttatggagagactctttcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate