Basic Information
VIS ID
TVIS30013608
Fusion event
HIV-GIMAP1-GIMAP5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150427572/150730484 (Hg38)
End
150427572/150730484 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
GIMAP1-GIMAP5
Nearest miRNA
hsa-mir-10399/Upstream/3352363; hsa-mir-153-2/Downstream/507937;
Nearest TSS
ENST00000635602/Upstream/8231; ENST00000469272/Downstream/6864;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/9554, chr7-CpG: 124/Downstream/69237
Upstream sequence
aggtgagacctacccagaataatctcccctttaactaatgcaaaactagctgattagagactttaattaaatttgcaaaatcccttcacttctaccatgt
Downstream sequence
aaaccaatcataggaatgtcattcattctattcacaggtcttcccacactaaagaagaagagattatccagggcatgtatactagtttatgggaatcttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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