Basic Information
VIS ID
TVIS30013615
Fusion event
HIV-LOC105375587 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
155037232/155245522 (Hg38)
End
155037232/155245522 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
LOC105375587
Nearest miRNA
hsa-mir-10399/Upstream/3811883; hsa-mir-153-2/Downstream/2328814;
Nearest TSS
ENST00000635602/Upstream/41375; ENST00000418523/Downstream/21777;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/173987, chr7-CpG: 178/Downstream/51473
Nearby gene
INSIG1(No orient, 52254)
Upstream sequence
CAGTGAGGGGGTGAGCCCCATTTTCTCACCCACTCTGAAAGTGCAGGATGAGCCCTCAAATCCAAAGGCCCGGGCATAGCCAGGTGTCTCCTTGGAAGTA
Downstream sequence
AAGATCTTTTTCATGTGACTTAAAAGAAAATTACAAGGCTTCAGAGACCTAATGTGCTCCTAAAATGTGAAAGCCACTCTTGATAATAAGCCTTAAGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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