Basic Information
VIS ID
TVIS30013617
Fusion event
HIV-LOC101927914 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
157291394/157498700 (Hg38)
End
157291394/157498700 (Hg38)
Orient
+
Location type
ncRNA_exonic
Fragile sites / regions
FRA7I
Target gene
LOC101927914
Nearest miRNA
hsa-mir-10399/Upstream/6065061; hsa-mir-153-2/Downstream/75636;
Nearest TSS
ENST00000635602/Upstream/32469; ENST00000449903/Downstream/2622;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14838, chr7-CpG: 56/Downstream/2061
Upstream sequence
GGGAACAGCCTATAAAACTAGGAAAGCTAAGCGGCCATTGAAAACCCATCACTTCGGATCCACCAGCCACATAACCCTGGACAGGAAGATGAAAAGTACC
Downstream sequence
TTCTTCCCAGCGCTCAGCCTCCAGCTCTGGGCCTGGTGAAGACGGGCACAAAACAGCAGCAGTGAAACACAAAGTGAATCGAATTAGTCACTACTCAGGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate