Basic Information
VIS ID
TVIS30013619
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
2145866/2198313 (Hg38)
End
2145866/2198313 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3674/Upstream/121673; hsa-mir-10400/Downstream/4423811;
Nearest TSS
ENST00000518652/Upstream/54964; ENST00000633673/Downstream/297209;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/16160, chr8-CpG: 20/Downstream/40112
Nearby gene
MYOM2(No orient, 52486)
Upstream sequence
cctcccaagttgctgggaccacaggcacctgcctttacgcccTTCTTGTGCTGGGATTTCGGGTGTGAGCCTCCACACTGGCCCTGTTTCTCACGATGGG
Downstream sequence
ATTTCAGCTATGAGCCTCCACGCCTGGCCCTGTTTCTCACGCTGGGATTTTGGGTGTGAGTCCCCTTGCCCGGCCCTGTTTCTTGTGCTGGGATTTCGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate