Basic Information
VIS ID
TVIS30013620
Fusion event
HIV-LOC105377783 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
2233711/2287656 (Hg38)
End
2233711/2287656 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377783
Nearest miRNA
hsa-mir-3674/Upstream/211016; hsa-mir-10400/Downstream/4334468;
Nearest TSS
ENST00000518652/Upstream/144307; ENST00000633673/Downstream/207866;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/20968, chr8-CpG: 25/Downstream/8271
Nearby gene
MYOM2(No orient, 140331)
Upstream sequence
GGTAAAATGAATGCTTGGAGTCTTCAACCCAGAGCTCCAAGCAGGAGTCCAGCCAGAGTGCGTTTTTAGAACTGATTTATTAGCCCCATAAGGCCACCTG
Downstream sequence
AGATCTTTGTGGTTTGCAACGTCCTATTTTTTTTTCCTGAATTACTTTGTATCTGACTTAGACAGTTACGGGTTTTAGCATGGGATTTTGCATACAGATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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