Basic Information
VIS ID
TVIS30013621
Fusion event
HIV-LOC105377783 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
2247437/2301382 (Hg38)
End
2247437/2301382 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377783
Nearest miRNA
hsa-mir-3674/Upstream/224742; hsa-mir-10400/Downstream/4320742;
Nearest TSS
ENST00000518652/Upstream/158033; ENST00000633673/Downstream/194140;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/5125, chr8-CpG: 25/Downstream/124087
Nearby gene
LOC101927815(No orient, 139782)
Upstream sequence
tacaatcatggtgaaaggcacatcttcacagggtggcaggagagagaaggagtgccagcaggggaaatgccagatgcttataaaaccatcagatctcttg
Downstream sequence
agaactcactcactatcacgagaacagcatgggggaaacggcccccaggattcaattacctcccaccacgtcctcctatgacatgtggggtttatgggga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate