Basic Information
VIS ID
TVIS30013622
Fusion event
HIV-LOC105377796 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
5892109/6034587 (Hg38)
End
5892109/6034587 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377796
Nearest miRNA
hsa-mir-3674/Upstream/3957947; hsa-mir-10400/Downstream/587537;
Nearest TSS
ENST00000518652/Upstream/364510; ENST00000522905/Downstream/2387;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/911163, chr8-CpG: 72/Downstream/371474
Nearby gene
LOC100287015(No orient, 368968)
Upstream sequence
AACAAGTCGTGTAAATGAATTTGTAGTTTTCACAATGCTGCTGAAAATGCGGAAGTGTGTCAAGTGTTAGCTCTTCTGAAATGTTACAACCATAAGTACC
Downstream sequence
AGGATTCCCTATTGAAAATCACCCTTCTGAGAGTCTCAGTGCAACTTGGGCAAAAGACTTTAAATAAGATGTATATAATTCTATGCAAATCACAAAATCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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