Basic Information
VIS ID
TVIS30013633
Fusion event
HIV-KCTD9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
25295582/25438066 (Hg38)
End
25295582/25438066 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCTD9
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-124-1/Upstream/92592; hsa-mir-10400/Downstream/1610787;
Nearest TSS
ENST00000518652/Upstream/11486; ENST00000518225/Downstream/12545;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/252761, chr8-CpG: 134/Downstream/19704
Upstream sequence
TGGGGCAACCTGTAGGCAATGTAAAGAGTTTGGATGGAAACTGTACTAACTGAAAACAATGCTTTATAAAATGAATCCAGCAGAGAGCTCTGCTTTTTGA
Downstream sequence
ACACTTGAACAAATAAATGGTTGAGAAACATGAAAAAGAAAAAACTAGCAAATCTTGGTAATAGCTTGGTTTGCAGATGTGTGACACAGCATGGATAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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