Basic Information
VIS ID
TVIS30013635
Fusion event
HIV-ZNF395 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
28230470/28372953 (Hg38)
End
28230470/28372953 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF395
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-1226-3p ; hsa-mir-769-3p ; hsa-mir-125b-5p ; hsa-mir-525-3p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548n ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-7856-5p
Nearest miRNA
hsa-mir-124-1/Upstream/486837; hsa-mir-10400/Downstream/132163;
Nearest TSS
ENST00000518652/Upstream/19699; ENST00000523935/Downstream/2425;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/279602, chr8-CpG: 160/Downstream/12447
Upstream sequence
ACAGGGAGGGCAAGCTAAGAAGGCAGCGCTCTTCAGGACAAAGGATCAAGGCCAGGAGGGCCCCAAGAGAATCCGCCAAGTTGGAGAGAGGAGTAGAATG
Downstream sequence
CCAACTTGGTCACCAAATATTGAAATGACAGAAAAGGGAGGCCCCACTAACATCAGCTGGAGACCAAAGAGGGGATGCTGGAATACCCCAGTGAAGGCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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