Basic Information
VIS ID
TVIS30013640
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
40155368/40297849 (Hg38)
End
40155368/40297849 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/10340501; hsa-mir-10400/Downstream/973199;
Nearest TSS
ENST00000518652/Upstream/136391; ENST00000518722/Downstream/13412;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/774835, chr8-CpG: 20/Downstream/599796
Upstream sequence
ggaatttcatgcaggtggtgcacagacctcacttggggaagcgcAGCCTTGGCATCTTGCTTAAGGCCTGCCATTAGGCTCACTGAGCTCATTGAAATGC
Downstream sequence
TGCTAAATTTCATTGTATCAGCACATAGATAGGATGAGAACTCTCCACAGTTGAAAAAGTTCTTTAAAGAGATCTCAAAAACGTCTACCTTAGATGTGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate