Basic Information
VIS ID
TVIS30013645
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58003682/57091123 (Hg38)
End
58003682/57091123 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/14194848; hsa-mir-10400/Downstream/4623665;
Nearest TSS
ENST00000518652/Upstream/97279; ENST00000519314/Downstream/51566;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/97230, chr8-CpG: 102/Downstream/51263
Nearby gene
IMPAD1(No orient, 97252)
Upstream sequence
TCTGTTTGGTAAAGGATATATCCTATACTACAATACAACCAATGATTGCTGCTAGCAGAGGGCCTGCTATGTCTTACAAAAAAGCCTAAAGATGCATAAA
Downstream sequence
AGATTTAAAAGCCTCCTACTGTAGAGGAGGGCTGCCAGGCCTGTGCTACATTCCAATCAGGAAGGGTGCAGGAGCCACTCAATGGAGCCTAATCCTAAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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