Basic Information
VIS ID
TVIS30013648
Fusion event
HIV-LOC102724708 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68270643/67358408 (Hg38)
End
68270643/67358408 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724708
Nearest miRNA
hsa-mir-124-1/Upstream/2979151; hsa-mir-10400/Downstream/7190135;
Nearest TSS
ENST00000518652/Upstream/14433; ENST00000526382/Downstream/71259;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/14593, chr8-CpG: 64/Downstream/593782
Nearby gene
ARFGEF1(No orient, 14731)
Upstream sequence
tctggaagcttcgccccaaaggggcagctgcctatatgaggtgtctgtcggcccctattgggaagtgtctcccagttgggctacacaggggtcagggacc
Downstream sequence
cacttgaggaggcagtctgtccattctcagagctcaaacgccgtgctgggagaactgctactctcttcagagctgtcggacaaggatgtttaagtctgca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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