Basic Information
VIS ID
TVIS30013649
Fusion event
HIV-C8orf34 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69522053/68609818 (Hg38)
End
69522053/68609818 (Hg38)
Orient
+
Location type
Intronic
Target gene
C8orf34
Nearest miRNA
hsa-mir-124-1/Upstream/4230561; hsa-mir-10400/Downstream/5938725;
Nearest TSS
ENST00000518652/Upstream/76798; ENST00000325233/Downstream/15641;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/278250, chr8-CpG: 224/Downstream/1222045
Upstream sequence
TTTCCAGGGAAAATGCTGAAGTTCTCCATGTACCATTAATATCCTTCCTTAGTTTTGGAGGCCTGTGGGCCTCAAGGGAGAAACAAGTCAGATAAGTACT
Downstream sequence
AGTTATGGTCCAGCCACTAGTTTCCAGGAAGGTGGGAGGTGATGAGTTCAAACACAACAAAGCCAGGCAAGTGGAGCCAGGTGGAGATAAAGAATGAAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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