VISDB Viral Integration Site DataBase

VIS ID

TVIS30013651

Fusion event

HIV-XKR9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q13.3

Reference genome

Start

End

71848673/70936438 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-15b-5p ; hsa-mir-7156-3p ; hsa-mir-6516-3p ; hsa-mir-1206 ; hsa-mir-1272 ; hsa-mir-8084 ; hsa-mir-3662 ; hsa-mir-3121-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-548l ; hsa-mir-1277-5p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6505-5p ; hsa-mir-4789-5p ; hsa-mir-7153-3p

Nearest miRNA

hsa-mir-124-1/Upstream/6557181; hsa-mir-10400/Downstream/3612105;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/267023, chr8-CpG: 99/Downstream/610891

Nearby gene

XKR9(No orient, 200496)

Upstream sequence

ATCTGCTCCTGTGAAAGAGTTAGTGGCTTTCCTTACACTGGAAGAGCCCAGGCAGAGGGATGCTTGGTTTTCTCTGTATCGTAATCATGTCTGGGATGAT

Downstream sequence

TTTAAATAAGAGATTGAGTTAATTTTCATGAACTCTCTGTGGGAGAACTTAGATGCAATACAGTGATTGTAAATCTTGTGAATTTACCGGACACATTTGA