Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene797801117991886080080775799187178003028979890393798925757992322579924984798804017988060079903906799040557990620679906355799010267990113579930443
Basic Information
VIS ID
TVIS30013652
Fusion event
HIV-MRPS28 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
80842678/79930443 (Hg38)
End
80842678/79930443 (Hg38)
Orient
-
Location type
Intronic
Target gene
MRPS28
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-12123/Upstream/598169; hsa-mir-10400/Downstream/310946;
Nearest TSS
ENST00000518652/Upstream/58684; ENST00000522494/Downstream/72705;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/38354, chr8-CpG: 45/Downstream/99439
Upstream sequence
TCTTTAATCTCTGTCAGTGTTGTACTTTTGAACTTCCACTTTGTAACACTGCACTACACTAAACACTATATGTAGCAAGCATTCTATACGTTTGTAGAAG
Downstream sequence
ATTTTAGTAAATATGTACTTTCAAATGCTATATAACACATCTGCAACTTGTTTTGCAAACTGGGGGTCTGAAGTCTTTGGACAAGTCTGCATTCCACCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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