VISDB Viral Integration Site DataBase

VIS ID

TVIS30013656

Fusion event

HIV-PLEKHF2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q22.1

Reference genome

Start

End

96152275/95140047 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-20b-3p ; hsa-mir-3688-3p ; hsa-mir-3978 ; hsa-mir-4671-3p ; hsa-mir-4694-3p ; hsa-mir-4703-3p ; hsa-mir-1183 ; hsa-mir-1304-5p ; hsa-mir-1277-5p ; hsa-mir-5582-5p ; hsa-mir-6505-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aw ; hsa-mir-6516-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-6765-5p ; hsa-mir-1827 ; hsa-mir-4461 ; hsa-mir-154-5p ; hsa-mir-6882-5p ; hsa-mir-3912-3p

Nearest miRNA

hsa-mir-12123/Upstream/67051; hsa-mir-10400/Downstream/3253598;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/5546, chr8-CpG: 74/Downstream/128569

Upstream sequence

TTAAATTTTCCTCCTGCTTTCTAAACTAGGGGTTCCCCAAAGTTTAGTCCTCTGCTCTCGTTTTTCTTCCAGCATCAGCCAGCATCTCTAGGTGGGTGAC

Downstream sequence

TACCAAATCTCTCTGTCCTGGAGCTCCCTGCCCATCCTGGCATCTCTGTCCCGCAGATGTGTTTGTCTTGTGGATGCCCTGGAGGACTTCAAGATAAACA