Basic Information
VIS ID
TVIS30013657
Fusion event
HIV-CPQ integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
97921086/96908858 (Hg38)
End
97921086/96908858 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8B
Target gene
CPQ
Nearest miRNA
hsa-mir-12123/Upstream/1835862; hsa-mir-10400/Downstream/1484787;
Nearest TSS
ENST00000518652/Upstream/147618; ENST00000532528/Downstream/120611;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/263143, chr8-CpG: 100/Downstream/368518
Upstream sequence
acacacacacacacacacacCATATATTCTGGGGAAGAGGTGTTTTATTTTCCTTTTGTGTCATGATTTCATAGACCCTTATATTCTCTAAGAGATCTGG
Downstream sequence
GCTTTCAGCCACATTCCCATAGGATTCTGGAATTTTTCCCTCTACCCTCAGCCTGCCCCATCACCCAAGTGTGATTTTTGTGATTCTTGTGTTTCTCTAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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