Basic Information
VIS ID
TVIS30013668
Fusion event
HIV-EIF3H integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
117699642/116687403 (Hg38)
End
117699642/116687403 (Hg38)
Orient
+
Location type
Intronic
Target gene
EIF3H
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-4423-3p ; hsa-mir-3613-3p ; hsa-mir-3622a-5p ; hsa-mir-5582-5p ; hsa-mir-5571-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6888-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-4522 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-3120-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-3065-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3664-5p ; hsa-mir-548ah-5p ; hsa-mir-3609
Nearest miRNA
hsa-mir-12123/Upstream/4043820; hsa-mir-10400/Downstream/187325;
Nearest TSS
ENST00000518652/Upstream/29628; ENST00000519443/Downstream/68381;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1018007, chr8-CpG: 21/Downstream/68288
Upstream sequence
GATACAGTACTAAAGGAATATTGCAAAACAAATTCAATTATTAAGAATCAACAAAGTTTACACATTCACAAAAATGACTAAAAATCTCCATCTTACTTGC
Downstream sequence
TGAAACTTTTGGAGCTTCAGCAAAAGAAAAGCAAATCACAAATTGATGGCACTAAATTCACAAATCAACAGTGTAATCTCCAAATTTTTAAATAACTGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate