Basic Information
VIS ID
TVIS30013677
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
125440123/124427882 (Hg38)
End
125440123/124427882 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8C ; FRA8E
Nearest miRNA
hsa-mir-12123/Upstream/1079752; hsa-mir-10400/Downstream/80633;
Nearest TSS
ENST00000518652/Upstream/55190; ENST00000522518/Downstream/22938;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/54686, chr8-CpG: 89/Downstream/46398
Nearby gene
TRMT12(No orient, 22925)
Upstream sequence
ATGACGTGACTTGTAACTTAATTTTATTTGCCAAGGGAACCTCGAAGGATCCATAAAACCATACAGGCTGTAAAGAGGCATGTATAATAAATGAAGTATA
Downstream sequence
ACCTGGGGAACTAAACATTTTTAGATGTGGTCATGCAACCAGTTATTGTTGAAATATCTTGGAAATGTGAAGGGCAACAACAACAACAAAAATAAACAGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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