Basic Information
VIS ID
TVIS30013683
Fusion event
HIV-LINC00824 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
129532724/128520478 (Hg38)
End
129532724/128520478 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00824
Nearest miRNA
hsa-mir-1204/Upstream/370290; hsa-mir-10400/Downstream/963579;
Nearest TSS
ENST00000518652/Upstream/423959; ENST00000519048/Downstream/445523;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/670500, chr8-CpG: 122/Downstream/1418648
Upstream sequence
gaataacataatgtatataaagttcctatctcagtcatgatacCTTGAGGTCTTGTCAAACATGTTGGCTTTATCTCTTTCTCATCTCTTTCTTCTGGTC
Downstream sequence
CTTTCTTCCTGCCAGCCTGCCTTTCTCAAGTTTTTTGGTGGTAAAGCCAAGGCTAAGGGTGAGCAGACCCATGCTGAGTTAATCTGGGGCCATTACTATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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