Basic Information
VIS ID
TVIS30013693
Fusion event
HIV-ZNF252P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
146225905/145000519 (Hg38)
End
146225905/145000519 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA8D
Target gene
ZNF252P
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10400/Upstream/208528;
Nearest TSS
ENST00000518652/Upstream/7605; ENST00000527067/Downstream/2292;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/49568, chr8-CpG: 94/Downstream/2041
Upstream sequence
AAGCCAGGACTGTGGCAGTGCACTTGGCCAGGAGAGACAATGGACTGCGTTTCCCAGGCCCACCTATGAGGTCCTGCGCAGACGGCAAACAGCTGAGAAC
Downstream sequence
AGCGGACCAGGCTCTGGTGCTAAGGCAGCGAATGAGCAAATGGAGAAGTTAACACATATGCATGACACACAGACACAACGCCCAGGTGGtgtcaggtaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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