Basic Information
VIS ID
TVIS30013694
Fusion event
HIV-DOCK8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
296687/296687 (Hg38)
End
296687/296687 (Hg38)
Orient
+
Location type
Intronic
Target gene
DOCK8
Nearest miRNA
hsa-mir-1302-9/Upstream/266406; hsa-let-7a-1/Downstream/4553610;
Nearest TSS
ENST00000422679/Upstream/23603; ENST00000474772/Downstream/15271;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/81256, chr9-CpG: 22/Downstream/173421
Upstream sequence
TGAAGTGGTAAACAATTAAAATTCAAACACATCAGTGCATATAATTCAGTTACTCCCAGAACACCATAAAAATGTTTCCCTGATCAATAATTGCTTATTA
Downstream sequence
TGACATGCATTTGTTGTGCTAGCTGTCAAGGTGCTTAGCTATTTGCTTTCTAAAAGTATGAAAAGCACGCCCGGCTCATCAGCCTATGTGGTAACAAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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