Basic Information
VIS ID
TVIS30013697
Fusion event
HIV-RIC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
5767351/5767351 (Hg38)
End
5767351/5767351 (Hg38)
Orient
+
Location type
Intronic
Target gene
RIC1
miRNAs that regulate target gene
hsa-mir-103a-3p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-101-2/Upstream/916976; hsa-let-7a-1/Downstream/240475;
Nearest TSS
ENST00000422679/Upstream/3954; ENST00000490816/Downstream/2855;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/137608, chr9-CpG: 88/Downstream/65228
Upstream sequence
TATTACACAGTCGGGGAGCCAAATGAATTGTATGCTGGAGACTGAAACTGCTATCACCCATAGATGGGATATTGTCTTCTGAGAGATGACTATGAATTCA
Downstream sequence
CACTAACATTATAAAATCATGAGAATTTCCTCTGGTTTGTGAGGCCTGTGTATTCCTTCCTATGTTCTTCTGTTGTTGTCTCATTTTTTTCCTTACCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate