VISDB Viral Integration Site DataBase

VIS ID

TVIS30013699

Fusion event

HIV-TTC39B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

p22.3

Reference genome

Start

End

15273968/15273970 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4536-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-383-3p ; hsa-mir-1288-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-8061 ; hsa-mir-6868-3p ; hsa-mir-4760-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-3117-5p ; hsa-mir-6734-3p ; hsa-mir-3667-3p ; hsa-mir-6832-3p ; hsa-mir-425-5p ; hsa-mir-4517 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-129-5p ; hsa-mir-153-5p ; hsa-mir-4524b-3p ; hsa-mir-548u ; hsa-mir-7161-5p

Nearest miRNA

hsa-mir-101-2/Upstream/9266066; hsa-let-7a-1/Downstream/3299336;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/41031, chr9-CpG: 66/Downstream/32754

Upstream sequence

ACTTCCCCCCAGGACTGAGGCAGGGACTAAGAGCCATGGGTATTAGGTTCTACGGAATACAAACACGTGTCTACATGGCATCCACTCCTGTAAATCAAGA

Downstream sequence

TGTCCAAAATGGGAAACCAGACTGACATCAGAAGCATTATCATAGTGACTGACACACCTGGAGGATTCCTCAAATATTGAATTTCTCTCATAAAGAGAAA