Basic Information
VIS ID
TVIS30013708
Fusion event
HIV-UBAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
34210691/34210693 (Hg38)
End
34210691/34210693 (Hg38)
Orient
-
Location type
Intronic
Target gene
UBAP1
miRNAs that regulate target gene
hsa-mir-141-3p
Nearest miRNA
hsa-mir-101-2/Upstream/742758; hsa-let-7a-1/Downstream/1397401;
Nearest TSS
ENST00000422679/Upstream/31648; ENST00000359544/Downstream/9746;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/31211, chr9-CpG: 54/Downstream/107591
Upstream sequence
ctgtagtaccagctacctgggaggctgaggcaggaggattgcttgaacctgggaggcagagggttgcagtgagccgagattgtgtcaccacactccagcc
Downstream sequence
tgagtgacagagggagactccatctttaaaaaaaaaaaaaaTTTTTTTTTTTTACATGTTTTCTATAGGTATACTAGTTTACTGGTAGAGTGGTTGGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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